Array Designer

Array Designer is the software you need if you're working on microarray projects and want to create probes and primers. It helps you handle a ton of sequences quickly, saving you loads of time compared to doing it manually. This is especially handy when you're trying to dodge cross homologies, which can be tricky!

Streamlined Probe and Primer Creation

This app really makes the process easier for SNP detection projects. Not only does it let you create optimized BLAST searches on your local databases, but you can also connect straight to NCBI. These searches help ensure that your signals are clear and avoid those pesky cross homologies for better probe design.

Optimized Primers for Better Results

The primers generated by Array Designer are tailored for identical PCR reaction conditions. You can design more probes per sequence too, which boosts detection accuracy! And get this—the maximum length of a probe goes up to 99bp, plus you can create primers that amplify SNP sites.

Easy Sequence Management

If you've got more sequences to add, no problem! You can load them right from your local computer or pull them in from online databases like Entrez or dbSNP using assay IDs and accession numbers. It supports file formats like GenBank and FASTA, so you can even have multiple sequences in one document.

Simplified Data Exporting

Once you've done your searches, saving results is a breeze! You can export them to external files for further analysis using tools like Microsoft Excel or Lotus 123. The spreadsheet format makes it super easy to sort and organize your data for use in other specialized software.

User-Friendly Resources Available

Even though Array Designer is packed with features aimed at experienced scientists tackling big projects, it comes with a detailed manual that walks you through everything. Plus, there's a quick tour presentation and various tutorials available whenever you hit a snag!