ChipInspector - Advanced Microarray Data Analysis Software

ChipInspector is a sophisticated microarray analysis application designed to extract significant information directly from single probe expression levels. This powerful software enables researchers to analyze microarray data with unprecedented accuracy, providing insights that traditional analysis methods might miss.

By leveraging state-of-the-art genomic knowledge and sophisticated analysis techniques, ChipInspector dramatically increases the number of significant features while simultaneously reducing false positive rates by an order of magnitude. This makes it an essential tool for researchers working with microarray data, including challenging samples like formalin-fixed paraffin-embedded specimens.

Superior Microarray Analysis Technology

What sets ChipInspector apart is its unique approach to microarray data analysis. Instead of relying on summarized probe set data, this innovative software works at the individual probe level, eliminating statistical and gene calling errors at their source. By utilizing the world's largest database of alternative transcripts and promoters, ChipInspector achieves superior signal-to-noise ratios in microarray analysis compared to conventional methods.

Researchers can download ChipInspector along with BiblioSphere PathwayEdition in a single convenient package. The installer will place both applications on your hard disk, providing you with a comprehensive solution for microarray data analysis and pathway exploration.

Unmatched Accuracy in Microarray Data Analysis

ChipInspector's technology provides the foundation for unmatched accuracy in significance analysis of microarray data. By working at the single probe level, it overcomes common challenges in microarray analysis including normalization issues and interpolation problems that plague traditional methods.

The software has proven its worth even with challenging samples, extracting valuable insights from years-old formalin-fixed paraffin-embedded specimens. This makes it an invaluable tool for researchers working with archived tissue samples or difficult-to-obtain specimens.

Key Features of ChipInspector

• Uses single probe expression levels as input for enhanced accuracy


• Reduces false positive rates by approximately an order of magnitude


• Eliminates normalization and interpolation problems


• Significantly increases the number of detectable significant features


• Supports Affymetrix CEL files (with capability for other platforms)


• Assigns probes correctly to transcripts and genes


• Accounts for alternative transcripts in analysis


• Provides direct transcript view with probe mapping


• Applies state-of-the-art genomic knowledge to analysis


• Extracts new information by mining previous microarray experiments


• Generates results directly usable as input for BiblioSphere PathwayEdition

Integrated Workflow Solution

When you download ChipInspector, you're getting more than just a microarray analysis tool. The package includes BiblioSphere PathwayEdition, creating a seamless workflow from raw data to biological pathway analysis. This integration allows researchers to move efficiently from identifying significant expression changes to understanding their biological context.

The software's ability to correctly assign probes to transcripts and genes, while accounting for alternative transcripts, ensures that researchers get the most accurate picture of gene expression changes. This precise mapping is critical for downstream analyses and interpretation of biological significance.

Advanced Genomic Knowledge Integration

ChipInspector leverages advanced genomic knowledge to enhance microarray analysis. By incorporating information about alternative transcripts and promoters, it provides a more nuanced view of gene expression than traditional approaches. This integration of genomic knowledge helps researchers extract more meaningful biological insights from their data.

The software's ability to mine previous microarray experiments for new information also adds value, allowing researchers to place their findings in the context of existing knowledge. This comprehensive approach to data analysis maximizes the return on investment in microarray experiments.

Technical Requirements

• Java 1.5.0 or higher


• Active internet connection


• 2 GB main memory (RAM)


• 4 GB RAM for tiling arrays


• 2 GB available hard disk space

Seamless Software Download Experience

Genomatix offers a streamlined download process for ChipInspector and BiblioSphere PathwayEdition. With a single download, you'll receive both applications, maximizing efficiency and ensuring compatibility between these complementary tools. The installer handles all the details, placing both applications on your hard disk for immediate use.

For researchers working with microarray data, ChipInspector represents a significant advancement in analysis capabilities. Its probe-level approach, combined with sophisticated statistical methods and extensive genomic knowledge, delivers superior results compared to traditional analysis methods.

Download ChipInspector today to experience the difference that advanced microarray analysis can make in your research. With its ability to reduce false positives while increasing the detection of significant features, ChipInspector helps researchers extract maximum value from their microarray experiments, even with challenging samples.