TFSearch Viewer

TFSearch Viewer is a handy little app that helps you dive into FASTA files. With this tool, you can easily send multiple sequences to the TFSEARCH server all at once and find TFBS items from the results of all those sequences.

Compatibility with Windows

This software works on pretty much any version of Windows, as long as you've got the Java environment set up on your computer. It’s super easy to get going!

Portable and Easy to Use

The best part? TFSearch Viewer is portable! You just need to run the executable file, which means no complicated setup needed. If you want to uninstall it, simply delete the downloaded files from your computer.

No Messy Installations

This app doesn’t clutter your Windows registry or leave behind other setup files. It saves everything right on your computer where it’s easy to manage. You can even keep it on a USB drive and run it without needing admin rights.

User-Friendly Interface

The interface is simple and clear, bringing all the options into one window. There isn’t a help manual included, so you might have to play around a bit to figure out how things work.

Importing FASTA Files

You can import your own FASTA files using the built-in browse button since drag-and-drop isn't supported yet. Once you’re set up, you can tweak settings like thresholds and choose the direction of TF elements or use both options if needed!

Selecting Organism Matrices

You also have the choice between several organism matrices: all, vertebrate, arthropod, yeast, and plant. This gives you flexibility when analyzing your data!

Log Panel for Quick Insights

There’s a log panel right in the main window that shows how many sequences were loaded from your file. The output includes details about how many TFBS were found in each sequence with their occurrences ranked for easy reference.

Fast and Efficient Performance

User tests show that TFSearch Viewer gets its job done quickly without any hiccups. It’s light on CPU and memory usage too, so your overall computer performance won’t take a hit.

Your Go-To Tool for FASTA Files

In summary, TFSearch Viewer packs plenty of useful features for exploring FASTA files quickly and efficiently—perfect for professional users who need reliable tools!