Description
Arabidopsis Motif Scanner
Arabidopsis Motif Scanner is a handy tool made for researchers to explore gene connections and their roles. If you're diving into the world of plant biology, especially with the Arabidopsis thaliana, this app is really going to help you out!
Understanding Gene Functions
This software lets you find where cis-regulatory elements sit in the Arabidopsis thaliana. It's a popular model plant used in biology and genetics. Plus, it helps you link that info with other data to spot gene networks managed by transcription factors.
Comprehensive Database Access
The Arabidopsis Motif Scanner, as its name hints, allows you to dig deep into the genome of the Arabidopsis thaliana. It gives you access to a detailed database full of annotations and gene interactions for every result. This means you'll have loads of useful information right at your fingertips!
Merging Data for New Discoveries
You can even mix what you've found with NGS and DNA Chip Array results. This makes it easier to uncover new gene relationships and functions.
Identifying Metabolic Pathways
This tool uses DNA-protein and protein-protein interaction data, which helps identify metabolic pathways regulated by specific transcription factors. Pretty cool, right?
User-Friendly Interface
When you first open the app, it loads up the database and shows you the Motif Scanner tab. You can search using different parameters and filter your results easily.
Combining Data in Expression Tab
The Expression tab lets you pair up cis-acting element positions with NFS or DNA Chip Array expression data. You can tweak the Fold Change Threshold, filter what shows up, and export your findings—whether all at once or just selected entries.
Viewing Gene Organization Easily
If you're curious about gene organization, check out the Gene Viewer tab! You can get there by clicking on the AGI code box in the Motif Scanner tab or just putting in the code yourself.
Diving Deeper with Interactions Tab
If you're looking at EC or Interactions cells in the Motif Scanner tab, just click them! You'll see all that info displayed nicely in a tree view within the Interactions tab.
A Great Resource for Researchers
This app is mainly aimed at experienced researchers. But don't worry if you're new! There's a comprehensive user manual available online, so you'll catch on quickly and start using this awesome research tool in no time.
Download Arabidopsis Motif Scanner!
User Reviews for Arabidopsis Motif Scanner 11
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for Arabidopsis Motif Scanner
Arabidopsis Motif Scanner is a powerful research tool for analyzing gene relations and functions in the Arabidopsis thaliana plant model.
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for Arabidopsis Motif Scanner
Effective tool for plant genomic research, though could improve user interface and tutorial guidance.
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for Arabidopsis Motif Scanner
Arabidopsis Motif Scanner successfully offers a unique blend of functionality and usability for plant genetic researchers.
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for Arabidopsis Motif Scanner
Arabidopsis Motif Scanner offers efficient and accurate plant gene scanning. Perfect for researchers. User-friendly, a must-have for genomics field.
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for Arabidopsis Motif Scanner
Arabidopsis Motif Scanner offers effective searches with a user-friendly interface. Quirks with speed are noted.
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for Arabidopsis Motif Scanner
The Arabidopsis Motif Scanner is an outstanding tool for gene analysis! It’s user-friendly and comprehensive.
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for Arabidopsis Motif Scanner
This app has transformed my research process! The detailed database and filtering options are invaluable.