CellProfiler Analyst

CellProfiler Analyst is an application designed for academic research in the field of Biology. The utility comes with numerous tools that can help scientists explore and analyze large, high-dimensional image-derived data.

First off, you should make sure that you have the latest Java installed on your computer. While some users might be intimidated by the minimalistic looks of the main window and it could remind you of Windows' command line console, you do not require advanced technical skills or knowing commands to operate it.

It is necessary to mention that the application has a different approach and hence, provides distinct examination tools compared to CellProfiler. While the latter is designed to process images and numerical data, this utility relies on machine learning-based scoring of complex phenotypes.

At the same time, you should know that the application mostly addresses large sets of data and thus, if you are working with a large database, you can preview and analyze it from multiple perspectives.

The highlight of the application stems from the Classifier function, particularly since it allows you to train the computer to easily identify the objects of interest. Before you can take advantage of this feature, you need to fetch the object titles and sort them manually into specific bins to form a training set. Afterwards, you can specify the rules used to differentiate among the objects for each of the bin.

Further noteworthy features of the application are the scatter plot, histogram and density plot, all great instruments for exploring the relationship between the objects of study. Not only do they allow you examine the data from the tables, but you can also analyze relationships between objects from multiple perspectives.

In the eventuality that you are a Biology student or scientists who is involved in projects that entail exploring high-dimensional imagery for various research projects, then perhaps CellProfiler Analyst could lend you a hand.